Today, let's open expassy and use prosite to look at functional characterization of this protein sequence:
MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFCAPFRLIYHCIEVLIDKHISVYSINENFTVSFWFWLLVVTYMVFRYVNHMAYPVGANSTGTMACHKSAGVKQPAQGKNCPMARLTNSCKECLGFSLTPSHLGIVIHAYVLEEEVHELTKNESLALSKSWHLEGCTSSNGKLRNTGLSERGNPGDNGVFMVPKFNLNKVRYFSTLSKLNARKEDSLAYLTKINTTDFSELNKLMENNHNKTETINTRILKLMSDIRMLLIAYNKIKSKKGNMSKGSNNITLDGINISYLNKLSKDINTNMFKFSPVRRVEIPKTSGGFRPLSVGNPREKIVQESMRMMLEIIYNNSFSYYSHGFRPNLSCLTAIIQCKNYMQYCNWFIKVDLNKCFDTIPHNMLINVLNERIKDKGFMDLLYKLLRAGYVDKNNNYHNTTLGIPQGSVVSPILCNIFLDKLDKYLENKFENEFNTGNMSNRGRNPIYNSLSSKIYRCKLLSEKLKLIRLRDHYQRNMGSDKSFKRAYFVRYADDIIIGVMGSHNDCKNILNDINNFLKENLGMSINMDKSVIKHSKEGVSFLGYDVKVTPWEKRPYRMIKKGDNFIRVRHHTSLVVNAPIRSIVMKLNKHGYCSHGILGKPRGVGRLIHEEMKTILMHYLAVGRGIMNYYRLATNFTTLRGRITYILFYSCCLTLARKFKLNTVKKVILKFGKVLVDPHSKVSFSIDDFKIRHKMNMTDSNYTPDEILDRYKYMLPRSLSLFSGICQICGSKHDLEVHHVRTLNNAANKIKDDYLLGRMIKMNRKQITICKTCHFKVHQGKYNGPGL
Click on: http://www.expasy.ch/
and open PROSITE
Look at the following:
0. Domain structure of the protein
1. Clustal format(1st 3 sequences)• Retrieve the sequence LOGO from the alignment (for 15 aas)
2. Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching our protein
3. Retrieve a list of all Swiss-Prot/TrEMBL entries matching our protein
4. Scan Swiss-Prot/TrEMBL entries against our protein
5. view ligand binding statistics on our protein
6. Click on sequence ID and retrieve sequence Logo from alignment
For your classwork, here is your sequence
MLDQQTINIIKATVPVLKEHGVTITTTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMT
VLAAAQNIENLPAILPAVKKIAVKHCQAGVAAAHYPIVGQELLGAIKEVLGDAATDDILD
AWGKAYGVIADVFIQVEADLYAQAVE
Click on: http://www.expasy.ch/
and open PROSITE
Look at the following:
0. Domain structure of the protein
1. Clustal format(1st 3 sequences)• Retrieve the sequence LOGO from the alignment (for 15 aas)
2. Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching our protein
3. Retrieve a list of all Swiss-Prot/TrEMBL entries matching our protein
4. Scan Swiss-Prot/TrEMBL entries against our protein
5. view ligand binding statistics on our protein
6. Click on sequence ID and retrieve sequence Logo from alignment
For your classwork, here is your sequence
MLDQQTINIIKATVPVLKEHGVTITTTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMT
VLAAAQNIENLPAILPAVKKIAVKHCQAGVAAAHYPIVGQELLGAIKEVLGDAATDDILD
AWGKAYGVIADVFIQVEADLYAQAVE
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